1L4V Antibiotic date Mar 06, 2002
title Solution Structure Of Sapecin
authors H.Hanzawa, H.Iwai, K.Takeuchi, T.Kuzuhara, H.Komano, D.Kohda, F.In S.Natori, Y.Arata, I.Shimada
compound source
Molecule: Sapecin
Chain: A
Organism_scientific: Sarcophaga Peregrina
Organism_taxid: 7386
methodSolution NMR
related structures by homologous chain: 1ICA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin., Hanzawa H, Shimada I, Kuzuhara T, Komano H, Kohda D, Inagaki F, Natori S, Arata Y, FEBS Lett 1990 Sep 3;269(2):413-20. PMID:2401368
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (1l4v.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1L4V
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1L4V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L4V from S2C, [Save to disk]
  • View 1L4V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L4V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L4V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l4va_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l4v] [1l4v_A]
  • SWISS-PROT database: [P18313]
  • Belongs to the insect/fungal defensin (insect/fungal defensin) family according to TCDB.
  • Domain organization of [SAPE_SARPE] by SWISSPFAM
  • Domain found in 1L4V: [Knot1 ] by SMART
  • Other resources with information on 1L4V
  • Community annotation for 1L4V at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science