1L5T	Metal Transport	date	Mar 07, 2002
title	Crystal Structure Of A Domain-Opened Mutant (R121d) Of The H Lactoferrin N-Lobe Refined From A Merohedrally-Twinned Crys
authors	G.B.Jameson, B.F.Anderson, W.A.Breyer, J.W.Tweedie, E.N.Baker
compound		source
Molecule: Lactoferrin Chain: A, B Fragment: Residues 21-352 Synonym: Lactotransferrin Ec: 1.16.1.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Bhk Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnut
symmetry	Space Group: P 31	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 151.300 151.300 48.600 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand		enzyme	Oxidoreductase E.C.1.16.1.2 BRENDA
related structures	by homologous chain: 1BLF
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of a domain-opened mutant (R121D) of the human lactoferrin N-lobe refined from a merohedrally twinned crystal form., Jameson GB, Anderson BF, Breyer WA, Day CL, Tweedie JW, Baker EN, Acta Crystallogr D Biol Crystallogr 2002 Jun;58(Pt 6 Pt 2):955-62. PMID:12037297

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk] Biological Unit Coordinates (1l5t.pdb1.gz) 53 Kb Biological Unit Coordinates (1l5t.pdb2.gz) 53 Kb CSU: Contacts of Structural Units for 1L5T Likely Quarternary Molecular Structure file(s) for 1L5T Structure Factors (187 Kb) Retrieve 1L5T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1L5T from S2C, [Save to disk] Re-refined 1l5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1L5T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1L5T

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1L5T, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1l5ta_, region A [Jmol] [rasmolscript] [script source]     - Domain d1l5tb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1l5t_A] [1l5t_B] [1l5t] SWISS-PROT database: [P02788] Domain organization of [TRFL_HUMAN] by SWISSPFAM Domain found in 1L5T: [TR_FER ] by SMART

Other resources with information on 1L5T

Community annotation for 1L5T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---