1L61 Hydrolase (O-Glycosyl) date May 06, 1991
title Analysis Of The Interaction Between Charged Side Chains And Helix Dipole Using Designed Thermostable Mutants Of Phage T
authors H.Nicholson, B.W.Matthews
compound source
Molecule: Lysozyme
Chain: A
Ec: 3.2.1.17
Engineered: Yes
Organism_scientific: Enterobacteria Phage T4
Organism_taxid: 10665
symmetry Space Group: P 32 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.000 61.000 97.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand BME, CL enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 181L, 1LYJ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAnalysis of the interaction between charged side chains and the alpha-helix dipole using designed thermostable mutants of phage T4 lysozyme., Nicholson H, Anderson DE, Dao-pin S, Matthews BW, Biochemistry 1991 Oct 15;30(41):9816-28. PMID:1911773
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1l61.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1L61
  • CSU: Contacts of Structural Units for 1L61
  • Likely Quarternary Molecular Structure file(s) for 1L61
  • Structure Factors (85 Kb)
  • Retrieve 1L61 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L61 from S2C, [Save to disk]
  • Re-refined 1l61 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1L61 in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L61
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1L61, from MSDmotif at EBI
  • Genome occurence of 1L61's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l61__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1l61 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l61] [1l61_A]
  • SWISS-PROT database: [P00720]
  • Domain organization of [LYS_BPT4] by SWISSPFAM
  • Other resources with information on 1L61
  • Community annotation for 1L61 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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