1L9X Hydrolase date Mar 26, 2002
title Structure Of Gamma-Glutamyl Hydrolase
authors H.Li, T.J.Ryan, K.J.Chave, P.Van Roey
compound source
Molecule: Gamma-Glutamyl Hydrolase
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.201
length a length b length c angle alpha angle beta angle gamma
58.763 156.451 161.376 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand BME enzyme Hydrolase E.C. BRENDA
A, D, C, B
  • exopeptidase activity
  • omega peptidase activity
  • gamma-glutamyl-peptidase act...

  • Primary referenceThree-dimensional structure of human gamma -glutamyl hydrolase. A class I glatamine amidotransferase adapted for a complex substate., Li H, Ryan TJ, Chave KJ, Van Roey P, J Biol Chem 2002 Jul 5;277(27):24522-9. PMID:11953431
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (1l9x.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (1l9x.pdb2.gz) 54 Kb
  • Biological Unit Coordinates (1l9x.pdb3.gz) 55 Kb
  • Biological Unit Coordinates (1l9x.pdb4.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1L9X
  • CSU: Contacts of Structural Units for 1L9X
  • Likely Quarternary Molecular Structure file(s) for 1L9X
  • Structure Factors (1295 Kb)
  • Retrieve 1L9X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L9X from S2C, [Save to disk]
  • Re-refined 1l9x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1L9X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L9X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1L9X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l9xa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1l9xb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1l9xc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1l9xd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1l9x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l9x] [1l9x_A] [1l9x_D] [1l9x_C] [1l9x_B]
  • SWISS-PROT database: [Q92820]
  • Domain organization of [GGH_HUMAN] by SWISSPFAM
  • Other resources with information on 1L9X
  • Community annotation for 1L9X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science