1LD4	Virus	date	Apr 08, 2002
title	Placement Of The Structural Proteins In Sindbis Virus
authors	W.Zhang, S.Mukhopadhyay, S.V.Pletnev, T.S.Baker, R.J.Kuhn, M.G.Ro
compound		source
Molecule: Coat Protein C Chain: A, B, C, D Synonym: Capsid Protein C Ec: 3.4.21.-		Organism_scientific: Sindbis Virus Organism_taxid: 11034
Molecule: General Control Protein Gcn4 Chain: E, F, G, H, I, J, K, L Fragment: Leucine-Zipper (Residues 225-281) Synonym: Amino Acid Biosynthesis Regulatory Protein		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932
Molecule: Spike Glycoprotein E1 Chain: M, N, O, P Synonym: Fusion Protein E1		Organism_scientific: Sindbis Virus Organism_taxid: 11034
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	11.40 Å
ligand	UNX	enzyme	Hydrolase E.C.3.4.21 BRENDA
Gene Ontology	Chain Function Process Component C, A, B, D F, K, E, L, J, H, I, G N, M, O, P
Primary reference	Placement of the structural proteins in Sindbis virus., Zhang W, Mukhopadhyay S, Pletnev SV, Baker TS, Kuhn RJ, Rossmann MG, J Virol 2002 Nov;76(22):11645-58. PMID:12388725

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (327 Kb) [Save to disk] Biological Unit Coordinates (1ld4.pdb1.gz) 18933 Kb LPC: Ligand-Protein Contacts for 1LD4 CSU: Contacts of Structural Units for 1LD4 Likely Quarternary Molecular Structure file(s) for 1LD4 Retrieve 1LD4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LD4 from S2C, [Save to disk]

View 1LD4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LD4

VIPERdb: visual, structural and computational analysis of 1LD4 Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LD4, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ld4a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ld4b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1ld4c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1ld4d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1ld4e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1ld4f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1ld4g_, region G [Jmol] [rasmolscript] [script source]     - Domain d1ld4h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1ld4i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1ld4j_, region J [Jmol] [rasmolscript] [script source]     - Domain d1ld4k_, region K [Jmol] [rasmolscript] [script source]     - Domain d1ld4l_, region L [Jmol] [rasmolscript] [script source]     - Domain d1ld4m_, region M [Jmol] [rasmolscript] [script source]     - Domain d1ld4n_, region N [Jmol] [rasmolscript] [script source]     - Domain d1ld4o_, region O [Jmol] [rasmolscript] [script source]     - Domain d1ld4p_, region P [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ld4_F] [1ld4_L] [1ld4_M] [1ld4_N] [1ld4_A] [1ld4_K] [1ld4_G] [1ld4] [1ld4_J] [1ld4_C] [1ld4_B] [1ld4_H] [1ld4_I] [1ld4_E] [1ld4_O] [1ld4_D] [1ld4_P] SWISS-PROT database: [P03069] [P03316] Domain organization of [GCN4_YEAST] [POLS_SINDV] by SWISSPFAM Domain found in 1LD4: [BRLZ ] by SMART

Other resources with information on 1LD4

Community annotation for 1LD4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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