1LD4	Placement of the Structural Proteins in Sindbis Virus	date
authors	Zhang, W., Mukhopadhyay, S., Pletnev, S.V., Baker, T.S., Kuhn, R.J., Rossmann, M.G.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	11.40
ligand	UNX	enzyme
Gene Ontology	Chain Function Process Component C, A, B, D F, K, E, L, J, H, I, G N, M, O, P
Primary reference	Placement of the structural proteins in Sindbis virus., Zhang W, Mukhopadhyay S, Pletnev SV, Baker TS, Kuhn RJ, Rossmann MG, J Virol 2002 Nov;76(22):11645-58. PMID:12388725

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (327 Kb) [Save to disk] Biological Unit Coordinates (1ld4.pdb1.gz) 18933 Kb LPC: Ligand-Protein Contacts for 1LD4 CSU: Contacts of Structural Units for 1LD4 Likely Quarternary Molecular Structure file(s) for 1LD4 Retrieve 1LD4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LD4 from S2C, [Save to disk]

View 1LD4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LD4

VIPERdb: visual, structural and computational analysis of 1LD4 Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1LD4, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ld4a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ld4b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1ld4c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1ld4d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1ld4e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1ld4f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1ld4g_, region G [Jmol] [rasmolscript] [script source]     - Domain d1ld4h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1ld4i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1ld4j_, region J [Jmol] [rasmolscript] [script source]     - Domain d1ld4k_, region K [Jmol] [rasmolscript] [script source]     - Domain d1ld4l_, region L [Jmol] [rasmolscript] [script source]     - Domain d1ld4m_, region M [Jmol] [rasmolscript] [script source]     - Domain d1ld4n_, region N [Jmol] [rasmolscript] [script source]     - Domain d1ld4o_, region O [Jmol] [rasmolscript] [script source]     - Domain d1ld4p_, region P [Jmol] [rasmolscript] [script source] Fold representative 1ld4 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ld4_F] [1ld4_L] [1ld4_M] [1ld4_N] [1ld4_A] [1ld4_K] [1ld4_G] [1ld4] [1ld4_J] [1ld4_C] [1ld4_B] [1ld4_H] [1ld4_I] [1ld4_E] [1ld4_O] [1ld4_D] [1ld4_P] SWISS-PROT database: [P03069] [P03316] Domain organization of [GCN4_YEAST] [POLS_SINDV] by SWISSPFAM Domain found in 1LD4: [BRLZ ] by SMART

Other resources with information on 1LD4

Community annotation for 1LD4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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