1LHR Transferase date Apr 17, 2002
title Crystal Structure Of Pyridoxal Kinase Complexed With Atp
authors D.C.Liang, T.Jiang, M.H.Li
compound source
Molecule: Pyridoxal Kinase
Chain: A, B
Ec: 2.7.1.35
Organism_scientific: Ovis Aries
Organism_common: Sheep
Organism_taxid: 9940
Tissue: Brain
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.000 93.800 128.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ATP, K, ZN enzyme Transferase E.C.2.7.1.35 BRENDA
related structures by homologous chain: 1LHP, 1RFV
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of brain pyridoxal kinase, a novel member of the ribokinase superfamily., Li MH, Kwok F, Chang WR, Lau CK, Zhang JP, Lo SC, Jiang T, Liang DC, J Biol Chem 2002 Nov 29;277(48):46385-90. Epub 2002 Sep 15. PMID:12235162
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (1lhr.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 1LHR
  • CSU: Contacts of Structural Units for 1LHR
  • Likely Quarternary Molecular Structure file(s) for 1LHR
  • Structure Factors (323 Kb)
  • Retrieve 1LHR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LHR from S2C, [Save to disk]
  • Re-refined 1lhr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LHR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LHR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LHR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lhra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1lhrb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lhr_A] [1lhr_B] [1lhr]
  • SWISS-PROT database: [P82197]
  • Domain organization of [PDXK_SHEEP] by SWISSPFAM
  • Other resources with information on 1LHR
  • Community annotation for 1LHR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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