1LIL Immunoglobulin date May 13, 1996
title Bence Jones Protein Cle, A Lambda III Immunoglobulin Light- Chain Dimer
authors M.Schiffer, D.B.Huang
compound source
Molecule: Lambda III Bence Jones Protein Cle
Chain: A, B
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.340
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.170 72.540 49.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
related structures by homologous chain: 1MCI, 1Q1J
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePitfalls of molecular replacement: the structure determination of an immunoglobulin light-chain dimer., Huang DB, Ainsworth C, Solomon A, Schiffer M, Acta Crystallogr D Biol Crystallogr. 1996 Nov 1;52(Pt 6):1058-66. PMID:15299564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1lil.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 1LIL
  • Likely Quarternary Molecular Structure file(s) for 1LIL
  • Structure Factors (130 Kb)
  • Retrieve 1LIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LIL from S2C, [Save to disk]
  • Re-refined 1lil structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LIL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LIL, from MSDmotif at EBI
  • Genome occurence of 1LIL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lila2, region A:108-215 [Jmol] [rasmolscript] [script source]
        - Domain d1lila1, region A:2-107 [Jmol] [rasmolscript] [script source]
        - Domain d1lilb2, region B:108-215 [Jmol] [rasmolscript] [script source]
        - Domain d1lilb1, region B:2-107 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lil] [1lil_A] [1lil_B]
  • SWISS-PROT database: [P01842]
  • Domain organization of [LAC_HUMAN] by SWISSPFAM
  • Domains found in 1LIL: [IG_like] [IGv ] by SMART
  • Other resources with information on 1LIL
  • Community annotation for 1LIL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1LIL from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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