1LIO STRUCTURE OF APO T. GONDII ADENOSINE KINASE date
authors Schumacher, M.A., Scott, D.M., Mathews, I.I., Ealick, S.E., Brennan, R.G.
compound source
symmetry
R_factor
R_Free 0.2600000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
note 1LIO supersedes 1DH2
related structures by homologous chain: 1LIJ, 1LIK
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of Toxoplasma gondii adenosine kinase reveal a novel catalytic mechanism and prodrug binding., Schumacher MA, Scott DM, Mathews II, Ealick SE, Roos DS, Ullman B, Brennan RG, J Mol Biol 2000 May 19;298(5):875-93. PMID:10801355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1lio.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 1LIO
  • Likely Quarternary Molecular Structure file(s) for 1LIO
  • Retrieve 1LIO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LIO from S2C, [Save to disk]
  • View 1LIO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LIO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LIO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lioa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lio] [1lio_A]
  • SWISS-PROT database: [Q9TVW2]
  • Domain organization of [ADK_TOXGO] by SWISSPFAM
  • Other resources with information on 1LIO
  • Community annotation for 1LIO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1LIO from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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