1LJP Toxin date Apr 22, 2002
title Crystal Structure Of Beta-Cinnamomin Elicitin
authors M.L.Rodrigues, M.Archer, P.Martel, A.Jacquet, A.Cravador, M.A.Car
compound source
Molecule: Beta-Elicitin Cinnamomin
Chain: A, B
Engineered: Yes
Organism_scientific: Phytophthora Cinnamomi
Organism_taxid: 4785
Gene: Cin1b
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Smd1168
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pic9k
symmetry Space Group: P 1
R_factor 0.198 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.850 36.910 43.930 77.64 86.67 79.55
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1BXM, 1LRI
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of beta-cinnamomin, a protein toxic to some plant species., Rodrigues ML, Archer M, Martel P, Jacquet A, Cravador A, Carrondo MA, Acta Crystallogr D Biol Crystallogr 2002 Aug;58(Pt 8):1314-21. PMID:12136143
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (1ljp.pdb1.gz) 17 Kb
  • Biological Unit Coordinates (1ljp.pdb2.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1LJP
  • Likely Quarternary Molecular Structure file(s) for 1LJP
  • Structure Factors (123 Kb)
  • Retrieve 1LJP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LJP from S2C, [Save to disk]
  • Re-refined 1ljp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LJP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LJP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LJP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ljpa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ljpb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ljp] [1ljp_B] [1ljp_A]
  • SWISS-PROT database: [P15569]
  • Domain organization of [ELIB_PHYCI] by SWISSPFAM
  • Domain found in 1LJP: [Elicitin ] by SMART
  • Other resources with information on 1LJP
  • Community annotation for 1LJP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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