1LK9 Lyase date Apr 24, 2002
title The Three-Dimensional Structure Of Alliinase From Garlic
authors E.B.Kuettner, R.Hilgenfeld, M.S.Weiss
compound source
Molecule: Alliin Lyase
Chain: A, B
Synonym: Alliinase, Cysteine Sulphoxide Lyase
Ec: 4.4.1.4
Organism_scientific: Allium Sativum
Organism_common: Garlic
Organism_taxid: 4682
Other_details: Bulb
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.450 101.070 155.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand BMA, CL, DHA, EPE, FUC, NAG, PLP, SO4 enzyme Lyase E.C.4.4.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe active principle of garlic at atomic resolution., Kuettner EB, Hilgenfeld R, Weiss MS, J Biol Chem 2002 Nov 29;277(48):46402-7. Epub 2002 Sep 15. PMID:12235163
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (1lk9.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 1LK9
  • CSU: Contacts of Structural Units for 1LK9
  • Likely Quarternary Molecular Structure file(s) for 1LK9
  • Structure Factors (1148 Kb)
  • Retrieve 1LK9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LK9 from S2C, [Save to disk]
  • Re-refined 1lk9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LK9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LK9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LK9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lk9a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1lk9b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lk9] [1lk9_A] [1lk9_B]
  • SWISS-PROT database: [Q01594]
  • Domain organization of [ALLN1_ALLSA] by SWISSPFAM
  • Other resources with information on 1LK9
  • Community annotation for 1LK9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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