1LM8 Transcription date Apr 30, 2002
title Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex
authors J.H.Min, H.Yang, M.Ivan, F.Gertler, W.G.Kaelin Jr., N.P.Pavletic
compound source
Molecule: Elongin B
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-3

Molecule: Elongin C
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbb75

Molecule: Von Hippel-Lindau Disease Tumor Suppressor
Chain: V
Synonym: Vhl
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-3

Molecule: Hypoxia-Inducible Factor 1 Alpha
Chain: H
Fragment: Residues 556-575
Synonym: Hif-1 Alpha, Arnt Interacting Protein, Mop1
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Protein Is Naturally Found In Homo Sapiens.
symmetry Space Group: P 43 21 2
R_factor 0.196 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.500 59.500 245.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand HYP enzyme
note 1LM8 is a representative structure
related structures by homologous chain: 1LQB
Gene
Ontology
ChainFunctionProcessComponent
B


C


Primary referenceStructure of an HIF-1alpha -pVHL complex: hydroxyproline recognition in signaling., Min JH, Yang H, Ivan M, Gertler F, Kaelin WG Jr, Pavletich NP, Science 2002 Jun 7;296(5574):1886-9. PMID:12004076
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1lm8.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 1LM8
  • CSU: Contacts of Structural Units for 1LM8
  • Likely Quarternary Molecular Structure file(s) for 1LM8
  • Retrieve 1LM8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LM8 from S2C, [Save to disk]
  • View 1LM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LM8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LM8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lm8b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1lm8c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1lm8v_, region V [Jmol] [rasmolscript] [script source]
  • Fold representative 1lm8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lm8_H] [1lm8_B] [1lm8_V] [1lm8] [1lm8_C]
  • SWISS-PROT database: [Q15370] [Q15369] [Q16665] [P40337]
  • Domain organization of [ELOB_HUMAN] [ELOC_HUMAN] [HIF1A_HUMAN] [VHL_HUMAN] by SWISSPFAM
  • Domains found in 1LM8: [Skp1] [UBQ ] by SMART
  • Other resources with information on 1LM8
  • Community annotation for 1LM8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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