1LMJ Structural Protein date May 02, 2002
title Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+ Binding Epidermal Growth Factor-Like Domains
authors R.S.Smallridge, P.Whiteman, J.M.Werner, I.D.Campbell, P.A.Handford, A.K.Downing
compound source
Molecule: Fibrillin 1
Chain: A
Fragment: Cbegf12-13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fbn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nm554 And Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
methodSolution NMR
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and dynamics of a calcium binding epidermal growth factor-like domain pair from the neonatal region of human fibrillin-1., Smallridge RS, Whiteman P, Werner JM, Campbell ID, Handford PA, Downing AK, J Biol Chem 2003 Apr 4;278(14):12199-206. PMID:12511552
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (531 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1LMJ
  • CSU: Contacts of Structural Units for 1LMJ
  • Original NMR restraints for 1LMJ from PDB
  • Retrieve 1LMJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LMJ from S2C, [Save to disk]
  • View 1LMJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LMJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LMJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lmja1, region A:3-46 [Jmol] [rasmolscript] [script source]
        - Domain d1lmja2, region A:47-88 [Jmol] [rasmolscript] [script source]
  • Fold representative 1lmj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lmj] [1lmj_A]
  • SWISS-PROT database: [P35555]
  • Domain organization of [FBN1_HUMAN] by SWISSPFAM
  • Domain found in 1LMJ: [EGF_CA ] by SMART
  • Other resources with information on 1LMJ
  • Community annotation for 1LMJ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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