1LMP Hydrolase (O-Glycosyl) date Oct 25, 1994
title The Crystal Structures Of Three Complexes Between Chitooligosaccharides And Lysozyme From The Rainbow Trout
authors S.Karlsen, E.Hough
compound source
Molecule: Lysozyme
Chain: A
Synonym: Mucopeptide N-Acetylmuramylhydrolase
Organism_scientific: Oncorhynchus Mykiss
Organism_common: Rainbow Trout
Organism_taxid: 8022
Organ: Kidney
symmetry Space Group: P 31 2 1
length a length b length c angle alpha angle beta angle gamma
76.420 76.420 54.290 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand NAG, NDG enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1B5X, 1GE2

Primary referenceCrystal structures of three complexes between chito-oligosaccharides and lysozyme from the rainbow trout. How distorted is the NAG sugar in site D?, Karlsen S, Hough E, Acta Crystallogr D Biol Crystallogr. 1995 Nov 1;51(Pt 6):962-78. PMID:15299765
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1lmp.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1LMP
  • CSU: Contacts of Structural Units for 1LMP
  • Likely Quarternary Molecular Structure file(s) for 1LMP
  • Structure Factors (103 Kb)
  • Retrieve 1LMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LMP from S2C, [Save to disk]
  • Re-refined 1lmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LMP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LMP, from MSDmotif at EBI
  • Genome occurence of 1LMP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lmp__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1lmp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lmp] [1lmp_A]
  • SWISS-PROT database: [P11941]
  • Domain organization of [LYSC2_ONCMY] by SWISSPFAM
  • Domain found in 1LMP: [LYZ1 ] by SMART
  • Other resources with information on 1LMP
  • Community annotation for 1LMP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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