1LOL Lyase date May 06, 2002
title Crystal Structure Of Orotidine Monophosphate Decarboxylase Complex With Xmp
authors N.Wu, E.F.Pai
compound source
Molecule: Orotidine 5'-Monophosphate Decarboxylase
Chain: A, B
Synonym: Omp Decarboxylase, Ompdcase, Ompdecase
Engineered: Yes
Organism_scientific: Methanothermobacter Thermautotrophicus Str. Delta H;
Organism_taxid: 187420
Strain: Delta H
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.229
length a length b length c angle alpha angle beta angle gamma
57.570 55.482 66.129 90.00 94.28 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand BU2, XMP enzyme Lyase E.C. BRENDA
related structures by homologous chain: 1LOS, 1LP6
A, B

Primary referenceCrystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase., Wu N, Pai EF, J Biol Chem 2002 Aug 2;277(31):28080-7. PMID:12011084
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1lol.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 1LOL
  • CSU: Contacts of Structural Units for 1LOL
  • Likely Quarternary Molecular Structure file(s) for 1LOL
  • Structure Factors (506 Kb)
  • Retrieve 1LOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LOL from S2C, [Save to disk]
  • Re-refined 1lol structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LOL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LOL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lola_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1lolb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lol] [1lol_A] [1lol_B]
  • SWISS-PROT database: [O26232]
  • Domain organization of [PYRF_METTH] by SWISSPFAM
  • Domain found in 1LOL: [OMPdecase ] by SMART
  • Other resources with information on 1LOL
  • Community annotation for 1LOL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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