1LPL Structural Genomics, Unknown Function date May 08, 2002
title Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domai F53f4.3
authors S.Li, J.Finley, Z.J.Liu, S.H.Qiu, C.H.Luan, M.Carson, J.Tsao, D.Jo G.Lin, J.Zhao, W.Thomas, L.A.Nagy, B.Sha, L.J.Delucas, B.C.Wang, Southeast Collaboratory For Structural Genomics (Secsg)
compound source
Molecule: Hypothetical 25.4 Kda Protein F53f4.3 In Chromoso
Chain: A
Fragment: Cap-Gly Domain
Engineered: Yes
 Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: F53f4.3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Pdest 17.1
symmetry Space Group: P 61 2 2
R_factor 0.220 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.156 64.156 101.946 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.77 Å
related structures by homologous chain: 1TOV, 1WHG
Primary referenceCrystal structure of the cytoskeleton-associated protein glycine-rich (CAP-Gly) domain., Li S, Finley J, Liu ZJ, Qiu SH, Chen H, Luan CH, Carson M, Tsao J, Johnson D, Lin G, Zhao J, Thomas W, Nagy LA, Sha B, DeLucas LJ, Wang BC, Luo M, J Biol Chem 2002 Dec 13;277(50):48596-601. Epub 2002 Sep 7. PMID:12221106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1lpl.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1LPL
  • Likely Quarternary Molecular Structure file(s) for 1LPL
  • Structure Factors (143 Kb)
  • Retrieve 1LPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LPL from S2C, [Save to disk]
  • Re-refined 1lpl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1LPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LPL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LPL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lpla_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lpl] [1lpl_A]
  • SWISS-PROT database: [Q20728]
  • Domain organization of [TBCB_CAEEL] by SWISSPFAM
  • Domain found in 1LPL: [CAP_GLY ] by SMART
    • Other resources with information on 1LPL
  • Community annotation for 1LPL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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