1LPZ Hydrolase date May 08, 2002
title Crystal Structure Of Fxa In Complex With 41.
authors H.A.Schreuder, V.Brachvogel, A.Liesum
compound source
Molecule: Blood Coagulation Factor Xa
Chain: A
Fragment: Light Chain
Ec: 3.4.21.6
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Blood Coagulation Factor Xa
Chain: B
Ec: 3.4.21.6

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.300 72.000 78.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CA, CMB BindingDB enzyme Hydrolase E.C.3.4.21.6 BRENDA
related structures by homologous chain: 1XKA, 1XKB
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDesign and quantitative structure-activity relationship of 3-amidinobenzyl-1H-indole-2-carboxamides as potent, nonchiral, and selective inhibitors of blood coagulation factor Xa., Matter H, Defossa E, Heinelt U, Blohm PM, Schneider D, Muller A, Herok S, Schreuder H, Liesum A, Brachvogel V, Lonze P, Walser A, Al-Obeidi F, Wildgoose P, J Med Chem 2002 Jun 20;45(13):2749-69. PMID:12061878
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1lpz.pdb1.gz) 11 Kb
  • Biological Unit Coordinates (1lpz.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1LPZ
  • CSU: Contacts of Structural Units for 1LPZ
  • Likely Quarternary Molecular Structure file(s) for 1LPZ
  • Structure Factors (110 Kb)
  • Retrieve 1LPZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LPZ from S2C, [Save to disk]
  • Re-refined 1lpz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LPZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LPZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lpza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1lpzb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lpz_A] [1lpz] [1lpz_B]
  • SWISS-PROT database: [P00742]
  • Domain organization of [FA10_HUMAN] by SWISSPFAM
  • Domains found in 1LPZ: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART
  • Other resources with information on 1LPZ
  • Community annotation for 1LPZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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