1LQS Immune System date May 13, 2002
title Crystal Structure Of Human Cytomegalovirus Il-10 Bound To So Human Il-10r1
authors B.C.Jones, N.J.Logsdon, K.Josephson, J.Cook, P.A.Barry, M.R.Walte
compound source
Molecule: Interleukin-10 Receptor Alpha Chain
Chain: R, S
Fragment: Extracellular Domain, Residues 22-235
Synonym: Il-10r-A, Il-10r1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtv5his

Molecule: Interleukin-10-Like Protein
Chain: L, M
Fragment: Residues 20-176
Engineered: Yes

Organism_scientific: Human Herpesvirus 5
Organism_common: Human Cytomegalovirus
Organism_taxid: 10359
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtv5his
symmetry Space Group: C 1 2 1
R_factor 0.244 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.290 104.680 91.890 90.00 106.49 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand NAG enzyme
related structures by homologous chain: 1Y6M, 1Y6N
Gene
Ontology
ChainFunctionProcessComponent
M, L
  • cytokine activity


  • Primary referenceCrystal structure of human cytomegalovirus IL-10 bound to soluble human IL-10R1., Jones BC, Logsdon NJ, Josephson K, Cook J, Barry PA, Walter MR, Proc Natl Acad Sci U S A 2002 Jul 9;99(14):9404-9. PMID:12093920
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1lqs.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 1LQS
  • CSU: Contacts of Structural Units for 1LQS
  • Likely Quarternary Molecular Structure file(s) for 1LQS
  • Structure Factors (268 Kb)
  • Retrieve 1LQS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LQS from S2C, [Save to disk]
  • Re-refined 1lqs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LQS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LQS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LQS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lqsl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1lqsm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1lqsr2, region R:101-208 [Jmol] [rasmolscript] [script source]
        - Domain d1lqsr1, region R:2-100 [Jmol] [rasmolscript] [script source]
        - Domain d1lqss2, region S:101-207 [Jmol] [rasmolscript] [script source]
        - Domain d1lqss1, region S:2-100 [Jmol] [rasmolscript] [script source]
  • Fold representative 1lqs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lqs_S] [1lqs_M] [1lqs_L] [1lqs] [1lqs_R]
  • SWISS-PROT database: [Q13651] [P17150]
  • Domain organization of [I10R1_HUMAN] [IL10H_HCMVA] by SWISSPFAM
  • Domain found in 1LQS: [IL10 ] by SMART
  • Other resources with information on 1LQS
  • Community annotation for 1LQS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science