1LRE Cell Surface Protein date May 08, 1997
title Receptor Associated Protein (Rap) Domain 1, Nmr, 20 Structures
authors P.R.Nielsen, F.M.Poulsen
compound source
Molecule: Receptor-Associated Protein
Chain: A
Fragment: N-Terminal Domain, Domain 1, Residues 17 - 97
Synonym: Rap, Low Density Lipoprotein Receptor Related Protein, Alpha=2=Macroglobulin Receptor Associated Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_plasmid: Pt=7=H=6=Ub
methodSolution NMR
related structures by homologous chain: 1NRE
Primary referenceThe solution structure of the N-terminal domain of alpha2-macroglobulin receptor-associated protein., Nielsen PR, Ellgaard L, Etzerodt M, Thogersen HC, Poulsen FM, Proc Natl Acad Sci U S A 1997 Jul 8;94(14):7521-5. PMID:9207124
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (456 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1LRE
  • Retrieve 1LRE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LRE from S2C, [Save to disk]
  • View 1LRE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LRE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LRE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lre__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1lre from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lre] [1lre_A]
  • SWISS-PROT database: [P30533]
  • Domain organization of [AMRP_HUMAN] by SWISSPFAM
  • Other resources with information on 1LRE
  • Community annotation for 1LRE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1LRE from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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