1LRX	Membrane Protein	date	Sep 15, 1998
title	Theoretic Model Of The Human Low-Density Lipoprotein Receptor Ywtd Beta-Propeller Domain
authors	T.A.Springer
compound		source
Molecule: Protein (Low-Density Lipoprotein Receptor) Chain: B Fragment: Ywtd Domain		Organism_scientific: Homo Sapiens Organism_common: Human Cellular_location: Extracellular
method	Theoretical Model
Primary reference	An extracellular beta-propeller module predicted in lipoprotein and scavenger receptors, tyrosine kinases, epidermal growth factor precursor, and extracellular matrix components., Springer TA, J Mol Biol 1998 Nov 6;283(4):837-62. PMID:9790844

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] CSU: Contacts of Structural Units for 1LRX SEQRES to COORDINATES correlation for 1LRX from S2C, [Save to disk]

View 1LRX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1LRX

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 1lrx from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

SWISS-PROT database: [P01130] Domain organization of [LDLR_HUMAN] by SWISSPFAM Alignments of the sequence of 1LRX with the sequences similar proteins can be viewed for 1LRX's classification [LDLR_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [LDLR_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1LRX

Community annotation for 1LRX at PDBWiki (http://pdbwiki.org)

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