1LS2 Translation Rna date May 16, 2002
title Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em Map Tu Ternary Complex (Gdp And Kirromycin) Bound To E. Coli 70
authors M.Valle, J.Sengupta, N.K.Swami, R.A.Grassucci, N.Burkhardt, K.H.N R.K.Agrawal, J.Frank
compound source
Molecule: Phenylalanine Transfer Rna
Chain: B
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Elongation Factor Tu
Chain: A
Synonym: Ef-Tu, P-43

Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 16.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process., Valle M, Sengupta J, Swami NK, Grassucci RA, Burkhardt N, Nierhaus KH, Agrawal RK, Frank J, EMBO J 2002 Jul 1;21(13):3557-67. PMID:12093756
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1ls2.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1LS2
  • Likely Quarternary Molecular Structure file(s) for 1LS2
  • Retrieve 1LS2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LS2 from S2C, [Save to disk]
  • View 1LS2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LS2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LS2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ls2a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ls2b_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ls2_A] [1ls2_B] [1ls2]
  • SWISS-PROT database: [P0CE48]
  • Domain organization of [EFTU2_ECOLI] by SWISSPFAM
  • Other resources with information on 1LS2
  • Community annotation for 1LS2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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