1LZ0 Transferase date Jun 10, 2002
title Glycosyltransferase A
authors S.I.Patenaude, N.O.L.Seto, S.N.Borisova, A.Szpacenko, S.L.Marcus M.M.Palcic, S.V.Evans
compound source
Molecule: Glycosyltransferase A
Chain: A
Fragment: Catalytic Domain (Residues 64-354)
Synonym: Fucosylglycoprotein Alpha-N-Acetylgalactosaminyltr
Ec: 2.4.1.40
Engineered: Yes
Other_details: N-Terminal Truncation
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.175 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.530 149.160 79.370 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand HG enzyme Transferase E.C.2.4.1.40 BRENDA
related structures by homologous chain: 1R81, 1WT3
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structural basis for specificity in human ABO(H) blood group biosynthesis., Patenaude SI, Seto NO, Borisova SN, Szpacenko A, Marcus SL, Palcic MM, Evans SV, Nat Struct Biol 2002 Sep;9(9):685-90. PMID:12198488
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1lz0.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (1lz0.pdb2.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 1LZ0
  • CSU: Contacts of Structural Units for 1LZ0
  • Likely Quarternary Molecular Structure file(s) for 1LZ0
  • Structure Factors (212 Kb)
  • Retrieve 1LZ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LZ0 from S2C, [Save to disk]
  • Re-refined 1lz0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LZ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LZ0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LZ0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lz0a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1lz0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lz0] [1lz0_A]
  • SWISS-PROT database: [P16442]
  • Domain organization of [BGAT_HUMAN] by SWISSPFAM
  • Other resources with information on 1LZ0
  • Community annotation for 1LZ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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