1M05	Immune System	date	Jun 11, 2002
title	Hla B8 In Complex With An Epstein Barr Virus Determinant
authors	L.Kjer-Nielsen, C.S.Clements, A.G.Brooks, A.W.Purcell, M.R.Fonte J.Mccluskey, J.Rossjohn
compound		source
Molecule: Hla Class I Histocompatibility Antigen, B-8 B080 Chain; Chain: A, C Fragment: Residues 25-301 Engineered: Yes Other_details: Truncation Mutant		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Beta-2-Microglobulin Chain: B, D Fragment: Residues 21-119 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ebna-3 Nuclear Protein Chain: E, F Fragment: Residues 193-201 Synonym: Ebna-3a Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. The Of The Protein Is Naturally Found In Epstein-Barr Virus.
symmetry	Space Group: P 21 21 21	R_factor 0.242 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.400 90.100 125.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	CD	enzyme
related structures	by homologous chain: 1S7Q, 1YDP
Gene Ontology	Chain Function Process Component D, B cellular response to iron io...
Primary reference	The structure of HLA-B8 complexed to an immunodominant viral determinant: peptide-induced conformational changes and a mode of MHC class I dimerization., Kjer-Nielsen L, Clements CS, Brooks AG, Purcell AW, Fontes MR, McCluskey J, Rossjohn J, J Immunol 2002 Nov 1;169(9):5153-60. PMID:12391232

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk] Biological Unit Coordinates (1m05.pdb1.gz) 72 Kb Biological Unit Coordinates (1m05.pdb2.gz) 72 Kb LPC: Ligand-Protein Contacts for 1M05 CSU: Contacts of Structural Units for 1M05 Likely Quarternary Molecular Structure file(s) for 1M05 Retrieve 1M05 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M05 from S2C, [Save to disk]

View 1M05 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1M05

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M05, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m05a2, region A:1-181 [Jmol] [rasmolscript] [script source]     - Domain d1m05a1, region A:182-277 [Jmol] [rasmolscript] [script source]     - Domain d1m05b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1m05c2, region C:1-181 [Jmol] [rasmolscript] [script source]     - Domain d1m05c1, region C:182-277 [Jmol] [rasmolscript] [script source]     - Domain d1m05d_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m05_F] [1m05_C] [1m05_D] [1m05] [1m05_A] [1m05_E] [1m05_B] SWISS-PROT database: [P30460] [P61769] [P12977] Domain organization of [1B08_HUMAN] [B2MG_HUMAN] [EBNA3_EBVB9] by SWISSPFAM Domain found in 1M05: [IGc1 ] by SMART

Other resources with information on 1M05

Community annotation for 1M05 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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