1M0V Hydrolase date Jun 14, 2002
title Nmr Structure Of The Type III Secretory Domain Of Yersinia Y Complexed With The Skap-Hom Phospho-Peptide N-Acetyl-Depydd
authors P.Khandelwal, K.Keliikuli, C.L.Smith, M.A.Saper, E.R.P.Zuiderweg
compound source
Molecule: Protein-Tyrosine Phosphatase Yoph
Chain: A
Fragment: Amino-Terminal Domain (Residues 1-129)
Synonym: Virulence Protein
Ec: 3.1.3.48
Engineered: Yes
 Organism_scientific: Yersinia Pseudotuberculosis
Organism_taxid: 633
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Skap55 Homologue
Chain: B
Synonym: Skap-Hom Peptide
Engineered: Yes
Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized. It Naturally Found In Mus Musculus (Mouse).
methodSolution NMR
ligand ACE, NH2, PTR enzyme Hydrolase E.C.3.1.3.48 BRENDA
related structures by homologous chain: 1K46
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and phosphopeptide binding to the N-terminal domain of Yersinia YopH: comparison with a crystal structure., Khandelwal P, Keliikuli K, Smith CL, Saper MA, Zuiderweg ER, Biochemistry 2002 Sep 24;41(38):11425-37. PMID:12234185
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (701 Kb) [Save to disk]
  • Biological Unit Coordinates (1m0v.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1M0V
  • CSU: Contacts of Structural Units for 1M0V
  • Retrieve 1M0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M0V from S2C, [Save to disk]
    • View 1M0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M0V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M0V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m0va_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m0v] [1m0v_A] [1m0v_B]
  • SWISS-PROT database: [P08538]
  • Domain organization of [YOPH_YERPS] by SWISSPFAM
    • Other resources with information on 1M0V
  • Community annotation for 1M0V at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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