1M12 Membrane Protein date Jun 17, 2002
title Nmr Solution Structure Of Human Saposin C
authors E.De Alba, S.Weiler, N.Tjandra
compound source
Molecule: Saposin C
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet-30b
methodSolution NMR
related structures by homologous chain: 1SN6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of human saposin C: pH-dependent interaction with phospholipid vesicles., de Alba E, Weiler S, Tjandra N, Biochemistry 2003 Dec 23;42(50):14729-40. PMID:14674747
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (438 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1M12
  • Original NMR restraints for 1M12 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1M12 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M12 from S2C, [Save to disk]
  • View 1M12 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M12
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M12, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m12a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1m12 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m12_A] [1m12]
  • SWISS-PROT database: [P07602]
  • Belongs to the amoebapore (amoebapore) family according to TCDB.
  • Domain organization of [SAP_HUMAN] by SWISSPFAM
  • Domain found in 1M12: [SapB ] by SMART
  • Other resources with information on 1M12
  • Community annotation for 1M12 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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