1M17 Transferase date Jun 17, 2002
title Epidermal Growth Factor Receptor Tyrosine Kinase Domain With 4-Anilinoquinazoline Inhibitor Erlotinib
authors J.Stamos, M.X.Sliwkowski, C.Eigenbrot
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Fragment: Tyrosine Kinase Domain (Residues 671-998)
Synonym: Receptor Protein-Tyrosine Kinase Erbb-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Autographica Californicat.Nicoplusia;
Expression_system_cell_line: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvl1392
symmetry Space Group: I 2 3
R_factor 0.251 R_Free 0.295
length a length b length c angle alpha angle beta angle gamma
147.800 147.800 147.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand AQ4 BindingDB enzyme Transferase E.C. BRENDA
note 1M17 (Molecule of the Month:pdb126)
related structures by homologous chain: 1M14, 1Z9I

Primary referenceStructure of the epidermal growth factor receptor kinase domain alone and in complex with a 4-anilinoquinazoline inhibitor., Stamos J, Sliwkowski MX, Eigenbrot C, J Biol Chem 2002 Nov 29;277(48):46265-72. Epub 2002 Aug 23. PMID:12196540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1m17.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 1M17
  • CSU: Contacts of Structural Units for 1M17
  • Likely Quarternary Molecular Structure file(s) for 1M17
  • Structure Factors (218 Kb)
  • Retrieve 1M17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M17 from S2C, [Save to disk]
  • Re-refined 1m17 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M17
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M17, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m17a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1m17 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m17] [1m17_A]
  • SWISS-PROT database: [P00533]
  • Domain organization of [EGFR_HUMAN] by SWISSPFAM
  • Domain found in 1M17: [TyrKc ] by SMART
  • Other resources with information on 1M17
  • Community annotation for 1M17 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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