1M4E Antimicrobial Protein date Jul 02, 2002
title Solution Structure Of Hepcidin-20
authors H.N.Hunter, D.B.Fulton, T.Ganz, H.J.Vogel
compound source
Molecule: Hepcidin
Chain: A
Fragment: Hepcidin-20 (Residues 65-84)
Synonym: Liver-Expressed Antimicrobial Peptide, Leap-1, Putative Liver Tumor Regressor, Pltr, Hepc20;
Engineered: Yes
Synthetic: Yes
Other_details: The Sequence Of The Protein Is Naturally Found In Homo Sapiens. The Protein Was Chemically Synthesized.
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of human hepcidin, a peptide hormone with antimicrobial activity that is involved in iron uptake and hereditary hemochromatosis., Hunter HN, Fulton DB, Ganz T, Vogel HJ, J Biol Chem 2002 Oct 4;277(40):37597-603. Epub 2002 Jul 22. PMID:12138110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1M4E
  • Original NMR restraints for 1M4E from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1M4E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M4E from S2C, [Save to disk]
  • View 1M4E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M4E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M4E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m4ea_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1m4e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m4e] [1m4e_A]
  • SWISS-PROT database: [P81172]
  • Belongs to the hepcidin (hepcidin) family according to TCDB.
  • Domain organization of [HEPC_HUMAN] by SWISSPFAM
  • Other resources with information on 1M4E
  • Community annotation for 1M4E at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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