1M4K Immune System date Jul 03, 2002
title Crystal Structure Of The Human Natural Killer Cell Activator Kir2ds2 (Cd158j)
authors X.Saulquin, L.N.Gastinel, E.Vivier
compound source
Molecule: Killer Cell Immunoglobulin-Like Receptor 2ds2
Chain: A
Synonym: Kir2ds2, Mhc Class I Nk Cell Receptor, Natural Kil Associated Transcript 5, Nkat-5, P58 Natural Killer Cell Re Clone Cl-49, P58 Nk Receptor, Nk Receptor 183 Acti;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.221 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.535 97.535 54.375 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand EDO, SO4 enzyme
related structures by homologous chain: 1IM9, 1NKR
Primary referenceCrystal structure of the human natural killer cell activating receptor KIR2DS2 (CD158j)., Saulquin X, Gastinel LN, Vivier E, J Exp Med 2003 Apr 7;197(7):933-8. Epub 2003 Mar 31. PMID:12668644
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (1m4k.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1M4K
  • CSU: Contacts of Structural Units for 1M4K
  • Likely Quarternary Molecular Structure file(s) for 1M4K
  • Structure Factors (143 Kb)
  • Retrieve 1M4K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M4K from S2C, [Save to disk]
  • Re-refined 1m4k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M4K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M4K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M4K, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m4ka2, region A:104-200 [Jmol] [rasmolscript] [script source]
        - Domain d1m4ka1, region A:8-103 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m4k_A] [1m4k]
  • SWISS-PROT database: [P43631]
  • Domain organization of [KI2S2_HUMAN] by SWISSPFAM
  • Domains found in 1M4K: [IG] [IG_like ] by SMART
  • Other resources with information on 1M4K
  • Community annotation for 1M4K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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