1M4Q	Peptide Binding Protein	date	Jul 03, 2002
title	Structure Of The Tsg101 Uev Domain In Complex With A Hiv-1 P Domain" Peptide, Cns Ensemble
authors	O.Pornillos, S.L.Alam, D.R.Davis, W.I.Sundquist
compound		source
Molecule: Tumor Susceptibility Gene 101 Protein Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tumor Susceptibility Gene 101 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11d
Molecule: Gag Polyprotein Chain: B Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Strain: Nl4-3 Gene: Gag Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Paed4
method	Solution NMR
related structures	by homologous chain: 1M4P, 1S1Q
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the Tsg101 UEV domain in complex with the PTAP motif of the HIV-1 p6 protein., Pornillos O, Alam SL, Davis DR, Sundquist WI, Nat Struct Biol 2002 Nov;9(11):812-7. PMID:12379843

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (819 Kb) [Save to disk] Biological Unit Coordinates (1m4q.pdb1.gz) 41 Kb CSU: Contacts of Structural Units for 1M4Q Experimental data, such as chemical shifts, at BioMagResBank (BMRB) NMR Restraints Grid from BioMagResBank (BMRB) Retrieve 1M4Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M4Q from S2C, [Save to disk]

View 1M4Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1M4Q

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M4Q, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m4qa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m4q] [1m4q_A] [1m4q_B] SWISS-PROT database: [Q9IF21] [Q99816] Domain organization of [Q9IF21_9HIV1] [TS101_HUMAN] by SWISSPFAM Domain found in 1M4Q: [UBCc ] by SMART

Other resources with information on 1M4Q

Community annotation for 1M4Q at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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