| Data retrieval |
- Asymmetric unit, PDB entry:
[header only] [complete with coordinates] (60 Kb) [Save to disk]
 - Biological Unit Coordinates (1m4u.pdb1.gz) 104 Kb
- LPC: Ligand-Protein Contacts for 1M4U
- CSU: Contacts of Structural Units for 1M4U
- Likely Quarternary Molecular Structure file(s) for 1M4U
- Structure Factors (210 Kb)
- Retrieve 1M4U in mmCIF format [Save to disk]
- SEQRES to COORDINATES
correlation for 1M4U
from S2C,
[Save to disk]
- Re-refined 1m4u structure
from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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| View 1M4U in 3D |
-
Proteopedia, because life has more than 2D.
- On Jmol, a nice Rasmol like molecule viewer.
This is good for easiest viewing of basic structure.
- On FirstGlance, an
excellent tool for a guided tour on the structure components, by
E. Martz.
- On AstexViewer, from
MSD-EBI
(viewer documentation).
- On RasMol
(Install RasMol freeware)
Here's help on
how to use RasMol.
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| Visual 3D analysis of 1M4U |
- Cartoon
representation from PDB Cartoon
- Ramachandran
plot from PDBSum
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| Structure-derived information |
- Electron Density
related parameters from EDS Electron Density Server, at Upsala
- Dipole moment, from Dipole Server at Weizmann Institute
- Crystal Contacts, from CryCo at Weizmann Institute
- 3D motif for 1M4U,
from MSDmotif at EBI
- Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1m4ua_, region A
[Jmol]
[rasmolscript]
[script source]
- Domain d1m4ul_, region L
[Jmol]
[rasmolscript]
[script source]
- Fold representative 1m4u from FSSP and Dali (Families of Structurally Similar Proteins)
- Class (fold), Architecture (subfold), Topology, Homologous superfamily from
CATH
- Summaries and structural analyses of PDB data files from
PDBSum
- Identification of Protein Pockets & Cavities at
CASTp
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| Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [1m4u_A] [1m4u_L]
- SWISS-PROT database: [P18075] [Q13253]
- Domain organization of [BMP7_HUMAN] [NOGG_HUMAN] by SWISSPFAM
- Domain found in 1M4U: [TGFB
] by SMART
- Alignments of the sequence of 1M4U with the sequences
similar proteins can be viewed for 1M4U's classification [BMP7_HUMAN] [NOGG_HUMAN] at ProtoMap.
Click on "Neighbors List", then on the "See Alignments" button below the list.
- A sequence distance tree ("phylogenetic tree")
can be viewed for 1ACL's classification [BMP7_HUMAN] [NOGG_HUMAN] at ProtoMap. Click on the Cluster number.
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Other resources with information on 1M4U |
- Community annotation for 1M4U at PDBWiki (http://pdbwiki.org)
- MMDB (Entrez's Structure Database)
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| Movements, Movies and Images |
- Images
from IMB Jena Image Library
of Biological Macromolecules.
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