1M5I Antitumor Protein date Jul 09, 2002
title Crystal Structure Of The Coiled Coil Region 129-250 Of The Tumor Suppressor Gene Product Apc
authors L.Tickenbrock, J.Cramer, I.R.Vetter, O.Mueller
compound source
Molecule: Apc Protein
Chain: A
Fragment: Coiled-Coil Region
Synonym: Adenomatous Polyposis Coli Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apc
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-2
symmetry Space Group: P 32 2 1
R_factor 0.257 R_Free 0.309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.047 46.047 113.299 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe coiled coil region (amino acids 129-250) of the tumor suppressor protein adenomatous polyposis coli (APC). Its structure and its interaction with chromosome maintenance region 1 (Crm-1)., Tickenbrock L, Cramer J, Vetter IR, Muller O, J Biol Chem 2002 Aug 30;277(35):32332-8. Epub 2002 Jun 17. PMID:12070164
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1m5i.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1M5I
  • Likely Quarternary Molecular Structure file(s) for 1M5I
  • Structure Factors (80 Kb)
  • Retrieve 1M5I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M5I from S2C, [Save to disk]
  • Re-refined 1m5i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M5I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M5I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M5I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m5ia_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1m5i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m5i_A] [1m5i]
  • SWISS-PROT database: [P25054]
  • Domain organization of [APC_HUMAN] by SWISSPFAM
  • Other resources with information on 1M5I
  • Community annotation for 1M5I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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