1M6R Dna date Jul 17, 2002
title Crystal Structure Of Rgd(Cgcgcg) Forming Hexamer Z-Dna Duple (Rg) Overhang
authors B.Pan, M.Sundaralingam
compound source
Molecule: 5'-R(G)D(Cpgpcpgpcpg)-3'
Chain: A, B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.191
length a length b length c angle alpha angle beta angle gamma
17.960 31.470 44.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.54 Å
Primary referenceCrystal structure of rGd(CGCGCG): a Z-DNA hexamer duplex with a 5'-(rG) overhang., Pan B, Sundaralingam M, Acta Crystallogr D Biol Crystallogr 2003 Mar;59(Pt 3):433-7. PMID:12595699
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (1m6r.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 1M6R
  • Likely Quarternary Molecular Structure file(s) for 1M6R
  • Structure Factors (32 Kb)
  • Retrieve 1M6R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M6R from S2C, [Save to disk]
  • Re-refined 1m6r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M6R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M6R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M6R, from MSDmotif at EBI
  • Fold representative 1m6r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m6r] [1m6r_B] [1m6r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1M6R
  • Community annotation for 1M6R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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