1M7D	Immune System	date	Jul 19, 2002
title	Crystal Structure Of A Monoclonal Fab Specific For Shigella Lipopolysaccharide Complexed With A Trisaccharide
authors	N.K.Vyas, M.N.Vyas, M.C.Chervenak, M.A.Johnson, B.M.Pinto, D.R.Bu F.A.Quiocho
compound		source
Molecule: Light Chain Of The Monoclonal Antibody Fab Syaj6 Chain: A Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc Cell_line: Syaj6 Hybridoma Organ: Spleen Cell: Plasmacytoma Cell Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Heavy Chain Of The Monoclonal Antibody Fab Syaj6 Chain: B Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc Cell_line: Syaj6 Hybridoma Organ: Spleen Cell: Plasmacytoma Cell Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 43 21 2	R_factor 0.216 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.000 71.000 198.000 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	MAG, RAE, RAM	enzyme
related structures	by homologous chain: 1K4D, 1XF3
Gene Ontology	Chain Function Process Component A B
Primary reference	Molecular recognition of oligosaccharide epitopes by a monoclonal Fab specific for Shigella flexneri Y lipopolysaccharide: X-ray structures and thermodynamics., Vyas NK, Vyas MN, Chervenak MC, Johnson MA, Pinto BM, Bundle DR, Quiocho FA, Biochemistry 2002 Nov 19;41(46):13575-86. PMID:12427018

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (1m7d.pdb1.gz) 69 Kb LPC: Ligand-Protein Contacts for 1M7D CSU: Contacts of Structural Units for 1M7D Likely Quarternary Molecular Structure file(s) for 1M7D Retrieve 1M7D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M7D from S2C, [Save to disk]

View 1M7D in 3D

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Visual 3D analysis of 1M7D

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M7D, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m7da1, region A:1-108 [Jmol] [rasmolscript] [script source]     - Domain d1m7da2, region A:109-211 [Jmol] [rasmolscript] [script source]     - Domain d1m7db1, region B:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1m7db2, region B:114-213 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m7d_A] [1m7d] [1m7d_B] SWISS-PROT database: [P01801] Domain organization of [HVM32_MOUSE] by SWISSPFAM Domains found in 1M7D: [IG_like] [IGv ] by SMART

Other resources with information on 1M7D

Community annotation for 1M7D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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