1M85 Oxidoreductase date Jul 24, 2002
title Structure Of Proteus Mirabilis Catalase For The Native Form
authors P.Gouet, H.M.Jouve, O.Dideberg
compound source
Molecule: Catalase
Chain: A
Ec: 1.11.1.6
 Organism_scientific: Proteus Mirabilis
Organism_taxid: 584
symmetry Space Group: P 62 2 2
R_factor 0.194 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.000 110.000 250.000 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, HEM, OMT, SO4 enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
note 1M85 supersedes 2CAE, 1CAE
related structures by homologous chain: 1E93
Gene
Ontology
ChainFunctionProcessComponent
A
  • catalase activity
  • peroxidase activity


    • Primary referenceCrystal structure of Proteus mirabilis PR catalase with and without bound NADPH., Gouet P, Jouve HM, Dideberg O, J Mol Biol 1995 Jun 23;249(5):933-54. PMID:7791219
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (1m85.pdb1.gz) 357 Kb
  • LPC: Ligand-Protein Contacts for 1M85
  • CSU: Contacts of Structural Units for 1M85
  • Likely Quarternary Molecular Structure file(s) for 1M85
  • Structure Factors (513 Kb)
  • Retrieve 1M85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M85 from S2C, [Save to disk]
  • Re-refined 1m85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1M85 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M85
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M85, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m85a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m85] [1m85_A]
  • SWISS-PROT database: [P42321]
  • Domain organization of [CATA_PROMI] by SWISSPFAM
  • Domain found in 1M85: [Catalase ] by SMART
    • Other resources with information on 1M85
  • Community annotation for 1M85 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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