1M8O Membrane Protein date Jul 25, 2002
title Platelet Integrin Alfaiib-Beta3 Cytoplasmic Domain
authors O.Vinogradova, A.Velyvis, A.Velyviene, B.Hu, T.Haas, E.F.Plow, J.Qin
compound source
Molecule: Platelet Integrin Alfaiib Subunit: Cytoplasmic Domain;
Chain: A
Fragment: Cytoplasmic Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet31b Pmal-C2

Molecule: Platele Integrin Beta3 Subunit: Cytoplasmic Domain;
Chain: B
Fragment: Cytoplasmic Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b Pmal-C2
methodSolution NMR
note 1M8O (Molecule of the Month:pdb134)
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceA structural mechanism of integrin alpha(IIb)beta(3) "inside-out" activation as regulated by its cytoplasmic face., Vinogradova O, Velyvis A, Velyviene A, Hu B, Haas T, Plow E, Qin J, Cell 2002 Sep 6;110(5):587-97. PMID:12230976
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (399 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1M8O
  • Retrieve 1M8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M8O from S2C, [Save to disk]
  • View 1M8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M8O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M8O, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m8oa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1m8ob_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1m8o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m8o] [1m8o_A] [1m8o_B]
  • SWISS-PROT database: [P08514] [P05106]
  • Domain organization of [ITA2B_HUMAN] [ITB3_HUMAN] by SWISSPFAM
  • Domain found in 1M8O: [Integrin_b_cyt ] by SMART
  • Other resources with information on 1M8O
  • Community annotation for 1M8O at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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