1M9Z Hormone Growth Factor date Jul 30, 2002
title Crystal Structure Of Human Tgf-Beta Type II Receptor Ligand Domain
authors C.C.Boesen, S.Radaev, S.A.Motyka, A.Patamawenu, P.D.Sun
compound source
Molecule: Tgf-Beta Receptor Type II
Chain: A
Fragment: Extracellular
Synonym: Tgfr-2, Tgf-Beta Type II Receptor
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.156 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.471 40.658 76.154 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.05 Å
ligand GOL enzyme
note 1M9Z is a representative structure
related structures by homologous chain: 1KTZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe 1.1 A crystal structure of human TGF-beta type II receptor ligand binding domain., Boesen CC, Radaev S, Motyka SA, Patamawenu A, Sun PD, Structure (Camb) 2002 Jul;10(7):913-9. PMID:12121646
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1m9z.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1M9Z
  • CSU: Contacts of Structural Units for 1M9Z
  • Likely Quarternary Molecular Structure file(s) for 1M9Z
  • Retrieve 1M9Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M9Z from S2C, [Save to disk]
  • View 1M9Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M9Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1M9Z from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M9Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m9za_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1m9z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m9z_A] [1m9z]
  • SWISS-PROT database: [P37173]
  • Domain organization of [TGFR2_HUMAN] by SWISSPFAM
  • Other resources with information on 1M9Z
  • Community annotation for 1M9Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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