1MAK Immunoglobulin date Sep 16, 1993
title Solution Structure Of An Isolated Antibody Vl Domain
authors K.L.Constantine, M.S.Friedrichs, W.J.Metzler, M.Wittekind, P.Hen L.Mueller
compound source
Molecule: Igg2a-Kappa 26-10 Fv (Light Chain)
Chain: A
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
methodSolution NMR
related structures by homologous chain: 1MAJ, 1QNZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of an isolated antibody VL domain., Constantine KL, Friedrichs MS, Metzler WJ, Wittekind M, Hensley P, Mueller L, J Mol Biol 1994 Feb 11;236(1):310-27. PMID:8107112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (435 Kb) [Save to disk]
  • Biological Unit Coordinates (1mak.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1MAK
  • Original NMR restraints for 1MAK from PDB
  • Retrieve 1MAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MAK from S2C, [Save to disk]
    • View 1MAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MAK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MAK, from MSDmotif at EBI
  • Genome occurence of 1MAK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mak__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mak_A] [1mak]
  • SWISS-PROT database: [P01631]
  • Domain organization of [KV2A7_MOUSE] by SWISSPFAM
  • Domain found in 1MAK: [IGv ] by SMART
    • Other resources with information on 1MAK
  • Community annotation for 1MAK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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