1MBE MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1 date
authors Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NH2 enzyme
related structures by homologous chain: 1MBF
Primary referenceComparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb., Ogata K, Morikawa S, Nakamura H, Hojo H, Yoshimura S, Zhang R, Aimoto S, Ametani Y, Hirata Z, Sarai A, et al., Nat Struct Biol 1995 Apr;2(4):309-20. PMID:7796266
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1mbe.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1MBE
  • CSU: Contacts of Structural Units for 1MBE
  • Retrieve 1MBE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MBE from S2C, [Save to disk]
    • View 1MBE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MBE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MBE, from MSDmotif at EBI
  • Genome occurence of 1MBE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mbe__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1mbe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mbe] [1mbe_A]
  • SWISS-PROT database: [P06876]
  • Domain organization of [MYB_MOUSE] by SWISSPFAM
  • Domain found in 1MBE: [SANT ] by SMART
    • Other resources with information on 1MBE
  • Community annotation for 1MBE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1MBE from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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