1MBH MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2 date
authors Ogata, K., Morikawa, S., Nakamura, H., Hojo, H., Yoshimura, S., Zhang, R., Aimoto, S., Ametani, Y., Hirata, Z., Sarai, A., Ishii, S., Nishimura, Y.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 50 Modelsresolution
ligand NH2 enzyme
related structures by homologous chain: 1MBG, 1MSE
Primary referenceComparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb., Ogata K, Morikawa S, Nakamura H, Hojo H, Yoshimura S, Zhang R, Aimoto S, Ametani Y, Hirata Z, Sarai A, et al., Nat Struct Biol 1995 Apr;2(4):309-20. PMID:7796266
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (751 Kb) [Save to disk]
  • Biological Unit Coordinates (1mbh.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1MBH
  • CSU: Contacts of Structural Units for 1MBH
  • Original NMR restraints for 1MBH from PDB
  • Retrieve 1MBH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MBH from S2C, [Save to disk]
  • View 1MBH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MBH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MBH, from MSDmotif at EBI
  • Genome occurence of 1MBH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mbh__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1mbh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mbh] [1mbh_A]
  • SWISS-PROT database: [P06876]
  • Domain organization of [MYB_MOUSE] by SWISSPFAM
  • Domain found in 1MBH: [SANT ] by SMART
  • Other resources with information on 1MBH
  • Community annotation for 1MBH at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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