1MCD	Immunoglobulin	date	Feb 25, 1993
title	Principles And Pitfalls In Designing Site Directed Peptide L
authors	A.B.Edmundson, D.L.Harris, Z.C.Fan, L.W.Guddat
compound		source
Molecule: Immunoglobulin Lambda-1 Light Chain Chain: A, B Synonym: Immunoglobulin Lambda-1 Light Chain Mcg Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Peptide N-Acetyl-D-Phe-B-Ala-L-His-D-Pro-Nh2 Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 31 2 1	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.300 72.300 185.900 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	NULL Å
ligand	ACE, BAL, DPN, DPR, NH2	enzyme
related structures	by homologous chain: 1MCE, 1MCL
Primary reference	Principles and pitfalls in designing site-directed peptide ligands., Edmundson AB, Harris DL, Fan ZC, Guddat LW, Schley BT, Hanson BL, Tribbick G, Geysen HM, Proteins 1993 Jul;16(3):246-67. PMID:8346191

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1mcd.pdb1.gz) 58 Kb LPC: Ligand-Protein Contacts for 1MCD CSU: Contacts of Structural Units for 1MCD Likely Quarternary Molecular Structure file(s) for 1MCD Retrieve 1MCD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MCD from S2C, [Save to disk]

View 1MCD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MCD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MCD, from MSDmotif at EBI Genome occurence of 1MCD's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mcda1, region A:1-111 [Jmol] [rasmolscript] [script source]     - Domain d1mcda2, region A:112-216 [Jmol] [rasmolscript] [script source]     - Domain d1mcdb1, region B:1-111 [Jmol] [rasmolscript] [script source]     - Domain d1mcdb2, region B:112-216 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mcd] [1mcd_P] [1mcd_A] [1mcd_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 1MCD: [IG_like] [IGv ] by SMART

Other resources with information on 1MCD

Community annotation for 1MCD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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