1MEK Electron Transport date Apr 16, 1996
title Human Protein Disulfide Isomerase, Nmr, 40 Structures
authors J.Kemmink, N.J.Darby, K.Dijkstra, M.Nilges, T.E.Creighton
compound source
Molecule: Protein Disulfide Isomerase
Chain: A
Fragment: Prolyl 4-Hydroxylase Beta Subunit
Ec: 5.3.4.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet-12
methodSolution NMR
ligand
enzyme Isomerase E.C.5.3.4.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure determination of the N-terminal thioredoxin-like domain of protein disulfide isomerase using multidimensional heteronuclear 13C/15N NMR spectroscopy., Kemmink J, Darby NJ, Dijkstra K, Nilges M, Creighton TE, Biochemistry 1996 Jun 18;35(24):7684-91. PMID:8672469
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1387 Kb) [Save to disk]
  • Biological Unit Coordinates (1mek.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 1MEK
  • Original NMR restraints for 1MEK from PDB
  • Retrieve 1MEK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MEK from S2C, [Save to disk]
    • View 1MEK in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MEK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MEK, from MSDmotif at EBI
  • Genome occurence of 1MEK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mek__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mek_A] [1mek]
  • SWISS-PROT database: [P07237]
  • Domain organization of [PDIA1_HUMAN] by SWISSPFAM
    • Other resources with information on 1MEK
  • Community annotation for 1MEK at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1MEK from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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