1MEY Transferase Dna date Sep 27, 1996
title Crystal Structure Of A Designed Zinc Finger Protein Bound To
authors C.A.Kim, J.M.Berg
compound source
Molecule: Dna (5'-D(Aptpgpapgpgpcpapgpapapcpt)
Chain: A, D
Engineered: Yes
 Synthetic: Yes

Molecule: Dna (5'-D(Tpapgptptpcptpgpcpcptp(C38)
Chain: B, E
Engineered: Yes
Synthetic: Yes

Molecule: Consensus Zinc Finger
Chain: C, F, G
Engineered: Yes
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free 0.319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.070 165.530 46.274 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand C38, CL, ZN enzyme
related structures by homologous chain: 1VA2
Primary referenceA 2.2 A resolution crystal structure of a designed zinc finger protein bound to DNA., Kim CA, Berg JM, Nat Struct Biol 1996 Nov;3(11):940-5. PMID:8901872
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1mey.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (1mey.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (1mey.pdb3.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 1MEY
  • CSU: Contacts of Structural Units for 1MEY
  • Likely Quarternary Molecular Structure file(s) for 1MEY
  • Retrieve 1MEY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MEY from S2C, [Save to disk]
    • View 1MEY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MEY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MEY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1meyc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1meyf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1meyg_, region G [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mey_F] [1mey] [1mey_E] [1mey_A] [1mey_G] [1mey_D] [1mey_C] [1mey_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 1MEY: [ZnF_C2H2 ] by SMART
    • Other resources with information on 1MEY
  • Community annotation for 1MEY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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