1MFG Signaling Protein date Aug 10, 2002
title The Structure Of Erbin Pdz Domain Bound To The Carboxy- Terminal Tail Of The Erbb2 Receptor
authors G.Birrane, J.Chung, J.A.Ladias
compound source
Molecule: Erb-B2 Interacting Protein
Chain: A
Fragment: Pdz Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kt

Molecule: Erb-B2 Carboxyl-Terminal Fragment
Chain: B
Fragment: Peptide Eylgldvpv
Engineered: Yes

Synthetic: Yes
Other_details: Peptide Synthesized Chemically
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.605 57.417 30.439 90.00 100.59 90.00
method X-Ray Diffractionresolution 1.25 Å
related structures by homologous chain: 1MFL
Primary referenceNovel mode of ligand recognition by the Erbin PDZ domain., Birrane G, Chung J, Ladias JA, J Biol Chem 2003 Jan 17;278(3):1399-402. PMID:12444095
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1mfg.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 1MFG
  • Likely Quarternary Molecular Structure file(s) for 1MFG
  • Retrieve 1MFG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MFG from S2C, [Save to disk]
  • View 1MFG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MFG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1MFG 1MFGA 1MFGB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MFG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mfga_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1mfg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mfg_A] [1mfg_B] [1mfg]
  • SWISS-PROT database: [P04626] [Q96RT1]
  • Domain organization of [ERBB2_HUMAN] [LAP2_HUMAN] by SWISSPFAM
  • Domain found in 1MFG: [PDZ ] by SMART
  • Alignments of the sequence of 1MFG with the sequences similar proteins can be viewed for 1MFG's classification [ERBB2_HUMAN] [LAP2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ERBB2_HUMAN] [LAP2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1MFG
  • Community annotation for 1MFG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science