1MFS Viral Protein date Apr 01, 1998
title Dynamical Behavior Of The Hiv-1 Nucleocapsid Protein; Nmr, 3 Structures
authors M.F.Summers, B.G.Turner, R.N.De Guzman, B.M.Lee, N.Tjandra
compound source
Molecule: Hiv-1 Nucleocapsid Protein
Chain: A
Fragment: Nucleocapsid, Zinc Binding Domains
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus
Organism_taxid: 12721
Strain: Nl4-3
Cell_line: Bl21
Gene: Nc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyse
Expression_system_plasmid: Pet-3a
Expression_system_gene: Nc
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDynamical behavior of the HIV-1 nucleocapsid protein., Lee BM, De Guzman RN, Turner BG, Tjandra N, Summers MF, J Mol Biol 1998 Jun 12;279(3):633-49. PMID:9641983
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (441 Kb) [Save to disk]
  • Biological Unit Coordinates (1mfs.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 1MFS
  • CSU: Contacts of Structural Units for 1MFS
  • Original NMR restraints for 1MFS from PDB
  • Retrieve 1MFS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MFS from S2C, [Save to disk]
    • View 1MFS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MFS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MFS, from MSDmotif at EBI
  • Genome occurence of 1MFS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mfs__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mfs_A] [1mfs]
  • SWISS-PROT database: [P35962] [P35963]
  • Domain organization of [GAG_HV1Y2] [POL_HV1Y2] by SWISSPFAM
  • Domain found in 1MFS: [ZnF_C2HC ] by SMART
    • Other resources with information on 1MFS
  • Community annotation for 1MFS at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1MFS from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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