1MFW Transferase date Aug 13, 2002
title Structure Of N-Terminal Doublecortin Domain From Dclk: Selenomethionine Labeled Protein
authors M.H.Kim, T.Cierpickil, U.Derewenda, D.Krowarsch, Y.Feng, Y.Devedj Z.Dauter, C.A.Walsh, J.Otlewski, J.H.Bushweller, Z.Derewenda
compound source
Molecule: Doublecortin-Like Kinase (N-Terminal Domain)
Chain: A
Fragment: (N-Terminal Domain), Residues 49-154
Synonym: Doublecortin
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgstunil
symmetry Space Group: P 1 21 1
R_factor 0.127 R_Free 0.180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.785 29.430 40.099 90.00 115.72 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand MSE, SO4 enzyme
related structures by homologous chain: 1MG4, 1UF0
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe DCX-domain tandems of doublecortin and doublecortin-like kinase., Kim MH, Cierpicki T, Derewenda U, Krowarsch D, Feng Y, Devedjiev Y, Dauter Z, Walsh CA, Otlewski J, Bushweller JH, Derewenda ZS, Nat Struct Biol 2003 May;10(5):324-33. PMID:12692530
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1mfw.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1MFW
  • CSU: Contacts of Structural Units for 1MFW
  • Likely Quarternary Molecular Structure file(s) for 1MFW
  • Structure Factors (61 Kb)
  • Retrieve 1MFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MFW from S2C, [Save to disk]
  • Re-refined 1mfw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MFW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MFW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mfwa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mfw_A] [1mfw]
  • SWISS-PROT database: [O15075]
  • Domain organization of [DCLK1_HUMAN] by SWISSPFAM
  • Domain found in 1MFW: [DCX ] by SMART
  • Other resources with information on 1MFW
  • Community annotation for 1MFW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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