1MGX Coagulation Factor date Jun 21, 1995
title Coagulation Factor, Mg(II), Nmr, 7 Structures (Backbone Atom
authors S.J.Freedman, B.C.Furie, B.Furie, J.D.Baleja
compound source
Molecule: Coagulation Factor Ix
Chain: A
Fragment: The Gla And Aromatic Amino Acid Stack Domains Fro - 47;
Ec: 3.4.21.22
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand CGU enzyme Hydrolase E.C.3.4.21.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of the phospholipid binding site in the vitamin K-dependent blood coagulation protein factor IX., Freedman SJ, Blostein MD, Baleja JD, Jacobs M, Furie BC, Furie B, J Biol Chem 1996 Jul 5;271(27):16227-36. PMID:8663165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1mgx.pdb1.gz) 4 Kb
  • LPC: Ligand-Protein Contacts for 1MGX
  • CSU: Contacts of Structural Units for 1MGX
  • Original NMR restraints for 1MGX from PDB
  • Retrieve 1MGX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MGX from S2C, [Save to disk]
    • View 1MGX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MGX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MGX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mgx__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mgx_A] [1mgx]
  • SWISS-PROT database: [P00740]
  • Domain organization of [FA9_HUMAN] by SWISSPFAM
  • Domain found in 1MGX: [GLA ] by SMART
    • Other resources with information on 1MGX
  • Community annotation for 1MGX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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