1MHD CRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA date
authors Shi, Y.
compound source
symmetry
R_factor
R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
related structures by homologous chain: 1OZJ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a Smad MH1 domain bound to DNA: insights on DNA binding in TGF-beta signaling., Shi Y, Wang YF, Jayaraman L, Yang H, Massague J, Pavletich NP, Cell 1998 Sep 4;94(5):585-94. PMID:9741623
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1mhd.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 1MHD
  • Likely Quarternary Molecular Structure file(s) for 1MHD
  • Retrieve 1MHD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MHD from S2C, [Save to disk]
  • View 1MHD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MHD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MHD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mhda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1mhdb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mhd_B] [1mhd] [1mhd_C] [1mhd_D] [1mhd_A]
  • SWISS-PROT database: [P84022]
  • Domain organization of [SMAD3_HUMAN] by SWISSPFAM
  • Domain found in 1MHD: [DWA ] by SMART
  • Other resources with information on 1MHD
  • Community annotation for 1MHD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science