1MI0 Immune System date Aug 21, 2002
title Crystal Structure Of The Redesigned Protein G Variant Nug2
authors S.Nauli, B.Kuhlman, I.Le Trong, R.E.Stenkamp, D.C.Teller, D.Baker
compound source
Molecule: Immunoglobulin-Binding Protein G
Chain: A, B
Fragment: Redesigned B1 Domain
Engineered: Yes
Mutation: Yes
Other_details: Redesigned First Beta-Hairpin, Variant Nug2
Organism_scientific: Finegoldia Magna
Organism_taxid: 334413
Strain: Atcc 29328
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.260 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.330 73.790 39.180 90.00 96.00 90.00
method X-Ray Diffractionresolution 1.85 Å
related structures by homologous chain: 1MHX, 1PGB
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2., Nauli S, Kuhlman B, Le Trong I, Stenkamp RE, Teller D, Baker D, Protein Sci 2002 Dec;11(12):2924-31. PMID:12441390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1mi0.pdb1.gz) 11 Kb
  • Biological Unit Coordinates (1mi0.pdb2.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1MI0
  • Likely Quarternary Molecular Structure file(s) for 1MI0
  • Structure Factors (85 Kb)
  • Retrieve 1MI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MI0 from S2C, [Save to disk]
  • Re-refined 1mi0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MI0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MI0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mi0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1mi0b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mi0] [1mi0_B] [1mi0_A]
  • SWISS-PROT database: [Q53291]
  • Domain organization of [Q53291_PEPMA] by SWISSPFAM
  • Other resources with information on 1MI0
  • Community annotation for 1MI0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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