1MJN	Immune System	date	Aug 28, 2002
title	Crystal Structure Of The Intermediate Affinity Al I Domain M
authors	M.Shimaoka, T.Xiao, J.H.Liu, Y.T.Yang, Y.C.Dong, C.D.Jun, A.Mccorm R.G.Zhang, J.H.Wang, T.A.Springer
compound		source
Molecule: Integrin Alpha-L Chain: A Fragment: Intermediate Affinity Al I Domain Synonym: Leukocyte Adhesion Glycoprotein Lfa-1 Alpha Chain, Function Associated Molecule 1, Alpha Chain, Cd11a; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 21 21 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.374 57.399 66.909 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.30 Å
ligand	MG	enzyme
related structures	by homologous chain: 1T0P
Primary reference	Structures of the alpha L I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation., Shimaoka M, Xiao T, Liu JH, Yang Y, Dong Y, Jun CD, McCormack A, Zhang R, Joachimiak A, Takagi J, Wang JH, Springer TA, Cell 2003 Jan 10;112(1):99-111. PMID:12526797

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (1mjn.pdb1.gz) 36 Kb LPC: Ligand-Protein Contacts for 1MJN CSU: Contacts of Structural Units for 1MJN Likely Quarternary Molecular Structure file(s) for 1MJN Retrieve 1MJN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MJN from S2C, [Save to disk]

View 1MJN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MJN

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1MJN from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MJN, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mjna_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mjn_A] [1mjn] SWISS-PROT database: [P20701] Domain organization of [ITAL_HUMAN] by SWISSPFAM Domain found in 1MJN: [VWA ] by SMART

Other resources with information on 1MJN

Community annotation for 1MJN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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