1MK3 Apoptosis date Aug 28, 2002
title Solution Structure Of Human Bcl-W Protein
authors A.Y.Denisov, M.S.Madiraju, G.Chen, A.Khadir, P.Beauparlant, G.Att G.C.Shore, K.Gehring
compound source
Molecule: Apoptosis Regulator Bcl-W
Chain: A
Synonym: Bcl-W
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Pet-29b+
methodSolution NMR
related structures by homologous chain: 1O0L
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of human BCL-w: modulation of ligand binding by the C-terminal helix., Denisov AY, Madiraju MS, Chen G, Khadir A, Beauparlant P, Attardo G, Shore GC, Gehring K, J Biol Chem 2003 Jun 6;278(23):21124-8. PMID:12651847
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk]
  • Biological Unit Coordinates (1mk3.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 1MK3
  • Original NMR restraints for 1MK3 from PDB
  • Retrieve 1MK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MK3 from S2C, [Save to disk]
    • View 1MK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MK3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MK3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mk3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mk3_A] [1mk3]
  • SWISS-PROT database: [Q92843]
  • Belongs to the bcl-2 (bcl-2) family according to TCDB.
  • Domain organization of [B2CL2_HUMAN] by SWISSPFAM
  • Domains found in 1MK3: [BCL] [BH4 ] by SMART
    • Other resources with information on 1MK3
  • Community annotation for 1MK3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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