1MMJ Hydrolase date Sep 04, 2002
title Porcine Pancreatic Elastase Complexed With A Potent Peptidyl Inhibitor, Fr136706
authors T.Kinoshita
compound source
Molecule: Elastase 1
Chain: N
Ec: 3.4.21.36
 Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Tissue: Pancreatic
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.290 58.310 75.520 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, FR1, SO4 enzyme Hydrolase E.C.3.4.21.36 BRENDA
related structures by homologous chain: 1C1M, 1ESB
Gene
Ontology
ChainFunctionProcessComponent
N


Primary referenceTrue interaction mode of porcine pancreatic elastase with FR136706, a potent peptidyl inhibitor., Kinoshita T, Nakanishi I, Sato A, Tada T, Bioorg Med Chem Lett 2003 Jan 6;13(1):21-4. PMID:12467609
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1mmj.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1MMJ
  • CSU: Contacts of Structural Units for 1MMJ
  • Likely Quarternary Molecular Structure file(s) for 1MMJ
  • Structure Factors (227 Kb)
  • Retrieve 1MMJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MMJ from S2C, [Save to disk]
  • Re-refined 1mmj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1MMJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MMJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MMJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mmjn_, region N [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mmj_N] [1mmj]
  • SWISS-PROT database: [P00772]
  • Domain organization of [CELA1_PIG] by SWISSPFAM
  • Domain found in 1MMJ: [Tryp_SPc ] by SMART
    • Other resources with information on 1MMJ
  • Community annotation for 1MMJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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